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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
#include <gtest/gtest.h>
#include <seqan3/alignment/configuration/align_config_scoring_scheme.hpp>
#include <seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp>
#include <seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp>
#include <seqan3/core/algorithm/configuration.hpp>
#include <seqan3/std/concepts>
template <typename t>
class align_confg_scoring_test : public ::testing::Test
{
public:
using scheme_t = std::tuple_element_t<0, t>;
using alph_t = std::tuple_element_t<1, t>;
};
using test_types = ::testing::Types<std::tuple<seqan3::aminoacid_scoring_scheme<int8_t>, seqan3::aa27>,
std::tuple<seqan3::nucleotide_scoring_scheme<int8_t>, seqan3::dna15>>;
TYPED_TEST_SUITE(align_confg_scoring_test, test_types, );
TYPED_TEST(align_confg_scoring_test, config_element_specialisation)
{
using scheme_t = typename TestFixture::scheme_t;
EXPECT_TRUE((seqan3::detail::config_element_specialisation<seqan3::align_cfg::scoring_scheme<scheme_t>>));
}
TYPED_TEST(align_confg_scoring_test, configuration)
{
using alph_t = typename TestFixture::alph_t;
using scheme_t = typename TestFixture::scheme_t;
{
seqan3::align_cfg::scoring_scheme elem{scheme_t{}};
seqan3::configuration cfg{elem};
EXPECT_EQ((seqan3::get<seqan3::align_cfg::scoring_scheme>(cfg).scheme.score(seqan3::assign_char_to('a',
alph_t{}),
seqan3::assign_char_to('a',
alph_t{}))),
0);
}
{
seqan3::configuration cfg{seqan3::align_cfg::scoring_scheme{scheme_t{}}};
EXPECT_EQ((seqan3::get<seqan3::align_cfg::scoring_scheme>(cfg).scheme.score(seqan3::assign_char_to('a',
alph_t{}),
seqan3::assign_char_to('c',
alph_t{}))),
-1);
}
}
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