File: align_cfg_band_example.cpp

package info (click to toggle)
seqan3 3.2.0%2Bds-6%2Bdeb12u1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 19,776 kB
  • sloc: cpp: 159,121; makefile: 1,290; sh: 414; ansic: 321; xml: 229; javascript: 98; perl: 29; python: 27; php: 25
file content (21 lines) | stat: -rw-r--r-- 1,161 bytes parent folder | download | duplicates (2) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
 
#include <seqan3/alignment/configuration/align_config_band.hpp>

int main()
{
    // A symmetric band around the main diagonal.
    seqan3::align_cfg::band_fixed_size band_cfg{seqan3::align_cfg::lower_diagonal{-4},
                                                seqan3::align_cfg::upper_diagonal{4}};

    // A band starting with the main diagonal shifted by 3 cells to the right.
    seqan3::align_cfg::band_fixed_size band_cfg_hi{seqan3::align_cfg::lower_diagonal{3},
                                                   seqan3::align_cfg::upper_diagonal{7}};

    // A band starting with the main diagonal shifted by 3 cells down.
    seqan3::align_cfg::band_fixed_size band_cfg_lo{seqan3::align_cfg::lower_diagonal{-7},
                                                   seqan3::align_cfg::upper_diagonal{-3}};

    // An invalid band configuration.
    // Using this band as a configuration in seqan3::align_pairwise would cause the algorithm to throw an exception.
    seqan3::align_cfg::band_fixed_size band_cfg_invalid{seqan3::align_cfg::lower_diagonal{7},
                                                        seqan3::align_cfg::upper_diagonal{3}};
}