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// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
#include <ranges> // include all of the standard library's views
#include <seqan3/alphabet/views/all.hpp> // include all of SeqAn's views
#include <seqan3/argument_parser/all.hpp> // optional: include the argument_parser
#include <seqan3/core/debug_stream.hpp>
int main(int argc, char ** argv)
{
// We use the seqan3::argument_parser which was introduced in the second chapter
// of the tutorial: "Parsing command line arguments with SeqAn".
seqan3::argument_parser myparser{"Assignment-3", argc, argv}; // initialize
std::string s{};
myparser.add_positional_option(s, "Please specify the DNA string.");
try
{
myparser.parse();
}
catch (seqan3::argument_parser_error const & ext) // the user did something wrong
{
std::cerr << "[PARSER ERROR]" << ext.what() << '\n'; // you can customize your error message
return 0;
}
auto s_as_dna = s | seqan3::views::char_to<seqan3::dna5>;
// Bonus:
//auto s_as_dna = s | std::views::transform([] (char const c)
//{
// return seqan3::assign_char_strictly_to(c, seqan3::dna5{});
//});
seqan3::debug_stream << "Original: " << s_as_dna << '\n';
seqan3::debug_stream << "RevComp: " << (s_as_dna | std::views::reverse | seqan3::views::complement) << '\n';
seqan3::debug_stream << "Frames: " << (s_as_dna | seqan3::views::translate) << '\n';
}
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