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// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
#include <vector>
#include <seqan3/alphabet/container/bitpacked_sequence.hpp> // include bitpacked sequence
#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/argument_parser/all.hpp> // include argument parser
#include <seqan3/core/debug_stream.hpp> // for debug_stream
int main(int argc, char ** argv)
{
using namespace seqan3::literals;
seqan3::argument_parser myparser("Vector-implementations-comparison", argc, argv);
size_t size{};
bool use_bitvector{};
myparser.add_positional_option(size, "Size of vector");
myparser.add_flag(use_bitvector, 'b', "bitvector", "Use bitvector instead of vector");
try
{
myparser.parse();
}
catch (seqan3::argument_parser_error const & ext) // catch user errors
{
seqan3::debug_stream << "[Error] " << ext.what() << "\n";
return -1;
}
if (use_bitvector)
{
seqan3::bitpacked_sequence<seqan3::dna4> vector;
vector.resize(size, 'A'_dna4);
seqan3::debug_stream << "Allocated seqan3::bitpacked_sequence<seqan3::dna4> of size " << vector.size() << '\n';
}
else
{
std::vector<seqan3::dna4> vector{size};
seqan3::debug_stream << "Allocated std::vector<seqan3::dna4> of size " << vector.size() << '\n';
}
}
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