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// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
#include <seqan3/alphabet/nucleotide/dna4.hpp>
#include <seqan3/core/debug_stream.hpp>
#include <seqan3/search/views/minimiser_hash.hpp>
using namespace seqan3::literals;
int main()
{
std::vector<seqan3::dna4> text{"CCACGTCGACGGTT"_dna4};
// Here a consecutive shape with size 4 (so the k-mer size is 4) and a window size of 8 is used.
auto minimisers = text | seqan3::views::minimiser_hash(seqan3::shape{seqan3::ungapped{4}}, seqan3::window_size{8});
// results in: [10322096095657499240, 10322096095657499142, 10322096095657499224]
// representing the k-mers [GTAC, TCGA, GACG]
seqan3::debug_stream << minimisers << '\n';
// Get hash values
uint64_t seed = 0x8F'3F'73'B5'CF'1C'9A'DE; // The default seed from minimiser_hash
// Use XOR on all minimiser values
auto hash_values = minimisers
| std::views::transform(
[seed](uint64_t i)
{
return i ^ seed;
});
seqan3::debug_stream << hash_values << '\n'; // results in: [182, 216, 134]
}
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