1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38
|
// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
#include <seqan3/test/snippet/create_temporary_snippet_file.hpp>
seqan3::test::create_temporary_snippet_file my_fastq{"my.fastq",
R"////![fastq_file]"}; // std::filesystem::current_path() / "my.fastq" will be deleted after the execution
//![main]
#include <seqan3/io/sequence_file/all.hpp>
#include <seqan3/utility/views/chunk.hpp>
int main()
{
seqan3::sequence_file_input fin{std::filesystem::current_path() / "my.fastq"};
// `&&` is important because seqan3::views::chunk returns temporaries!
for (auto && records : fin | seqan3::views::chunk(10))
{
// `records` contains 10 elements (or less at the end)
seqan3::debug_stream << "Taking the next 10 sequences:\n";
seqan3::debug_stream << "ID: " << (*records.begin()).id() << '\n'; // prints first ID in batch
}
//![main]
}
|