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#!/bin/bash
set -e
pkg=seqkit
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -Rf /usr/share/doc/${pkg}-examples/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
gunzip -r *
file=tests/hairpin.fa
seqkit seq -w 60 $file > testfile
echo "Test 1"
filegrep=`grep -c '^>' $file`
testfilegrep=`grep -c '^>' $file`
if [ "$filegrep" != "$testfilegrep" ]
then
exit 1
fi
echo "PASS"
cksumfile=`cat $file | md5sum | cut -d" " -f 1`
cksumtestfile=`cat testfile | md5sum | cut -d' ' -f 1`
echo "Test 2"
if [ "$cksumfile" != "$cksumtestfile" ]
then
exit 1
fi
echo "PASS"
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