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Upstream provides binary files without sources for:
* tests/pcs109_5k_prim.sam
* tests/pcs109_5k.sam
* tests/pcs109_5k_spliced.sam
These have been converted to corresponding text (.sam) files with command:
* samtools view -h -o <out>.sam <in>.bam
And the corresponding *.sam files are added to: debian/missing-sources
They can be generated back with the following commands:
* cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam
* cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam
* cat debian/missing-sources/pcs109_5k_spliced.sam | samtools view -Sb - > tests/pcs109_5k_spliced.bam
* samtools index tests/pcs109_5k_prim.bam tests/pcs109_5k_prim.bam.bai
* samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai
* samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai
These commands are also being run in debian/rules since these binaries are needed for autopkgtests.
-- Nilesh Patra <npatra974@gmail.com> Mon, 03 Aug 2020 21:49:28 +0530
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