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#!/usr/bin/make -f
#export DH_VERBOSE=1
export DEB_CFLAGS_MAINT_APPEND=-std=gnu90
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
%:
dh $@
override_dh_auto_build:
dh_auto_build
cp SeqPrep seqprep
TZ=UTC ronn -r --manual=seqprep --organization='Cancer Therapeutics Innovation Group' debian/seqprep.1.ronn
markdown_py -f README.html README.md
override_dh_clean:
dh_clean
rm -f seqprep
rm -f debian/*.1
rm -f README.html
override_dh_auto_test:
# This checks that the tests run and produce byte-identical results.
cd Test && mkdir -p out info && \
bash -xc 'gzcat(){ zcat "$$@" ; } ; . RUNTEST.sh'
[ `cat Test/info/pe_*.txt | md5sum | cut -b -10` = 8bc8e0787e ]
# remove output dirs right after testing to make sure the files
# will not be included in the data package
rm -rf Test/info Test/out
override_dh_install-indep:
dh_install
sed -i 's#../SeqPrep#/usr/bin/seqprep#' $(CURDIR)/debian/seqprep-data/usr/share/doc/seqprep/examples/RUNTEST.sh
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