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|
#!/bin/bash
set -e
pkg=libgbtools-dev
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
gunzip -r *
echo 'Test 1'
timeout 10s blixem -t N chr4_ref_seq.fasta chr4_dna_align.gff || true
echo 'PASS'
echo '=============================================================='
echo 'Test 2'
timeout 10s blixem -t P chr4_ref_seq.fasta chr4_protein_align.gff || true
echo 'PASS'
echo '=============================================================='
echo 'Test 3'
dotter chr4_ref_seq_short.fasta DA730641.fasta -e test3 -w
echo 'PASS'
echo '=============================================================='
echo 'Test 4'
if [ $(dpkg-architecture -qDEB_BUILD_ARCH) = "armhf" ] ; then
echo 'IGNORED' # see bug #972266
else
dotter chr4_ref_seq_short.fasta Q9H8G1.fasta -e test4 -r
echo 'PASS'
fi
echo '=============================================================='
echo 'Test 5'
belvu PF02171_seed.stock -o msf
echo 'PASS'
echo '=============================================================='
|
