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#!/bin/sh
#
#
# Description:
# Test Dotter in batch mode: export the dot-matrix.
#
# Results:
# The output file 'output.dot' should be the same as the file 'test1_result.dot'
#
RC=0
test_name=`basename $0`
test_dir=`dirname $0`
data_dir=$test_dir/../../../data
results_file="$test_dir/$test_name""_results"
output_file="$test_dir"/"output.dot"
# Run belvu and check if there are any differences to the saved results
dotter -b $output_file -q 246634 -f $data_dir/chr4_dna_align.gff $data_dir/chr4_ref_seq_short.fasta $data_dir/DA730641.fasta
diffs=`diff $results_file $output_file`
# If there were any problems or differences, set RC
if [ $? -ne 0 -o "$diffs" != "" ]
then
print "$test_name FAILED"
RC=1
fi
exit $RC
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