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#!/bin/sh
#
#
# Description:
# Test Dotter in batch mode: save both the dot-matrix and an exported PDF of the plot.
#
# Results:
# The output file 'output.dot' and 'output.pdf' should be the same as the files
# 'test3_result.dot' and 'test3_result.pdf' respectively.
#
RC=0
test_name=`basename $0`
test_dir=`dirname $0`
data_dir=$test_dir/../../../data
results_file1="$test_dir/$test_name""_results.dot"
results_file2="$test_dir/$test_name""_results.pdf"
output_file1="$test_dir"/"output.dot"
output_file2="$test_dir"/"output.pdf"
# Run belvu and check if there are any differences to the saved results
dotter -b $output_file1 -e $output_file2 -q 246634 -f $data_dir/chr4_dna_align.gff $data_dir/chr4_ref_seq_short.fasta $data_dir/DA730641.fasta
diffs=`diff $results_file1 $output_file1`
# If there were any problems or differences, set RC
if [ $? -ne 0 -o "$diffs" != "" ]
then
RC=1
fi
# Now check the second results file
diffs=`diff $results_file2 $output_file2`
# If there were any problems or differences, set RC
if [ $? -ne 0 -o "$diffs" != "" ]
then
RC=1
fi
if [ $RC -eq 1 ]
then
print "$test_name FAILED"
fi
exit $RC
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