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#!/bin/sh
#
# Description:
# Tests calling Dotter on a long sequence versus itself. Transcripts are supplied via a features
# file.
#
# Results:
# Dotter's graphical display should start up, showing a dot-plot where strong matching regions
# between the two sequences are shown as diagonal lines: since the two sequences match exactly,
# there will be a diagonal line from the top-left to the bottom-right corner. Any other matching
# regions (i.e. internal repeats) will also display as diagonal lines.
#
# Transcripts from the features file should be shown along both axes.
#
RC=0
test_name=`basename $0`
test_dir=`dirname $0`
data_dir=$test_dir/../../../data
dotter -q 246634 -s 246634 -f $data_dir/chr4_dna_align.gff $data_dir/chr4_ref_seq.fasta $data_dir/chr4_ref_seq.fasta
# If there was an error, set RC
if [ $? -ne 0 ]
then
RC=1
fi
exit $RC
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