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#!/bin/sh
#
# Description:
# Test Dotter in nucleotide->nucleotide mode, using the reverse-complemented version of the input
# match sequence. Also tests starting up in HSP mode.
#
# Results:
# Dotter starts up showing HSPs. Enable the pixelmap from the View menu to see if the alignments
# in the calculated dot-plot match the positions of the HSPs. The pixelmap and the HSPs show
# matches from the (reverse-complemented) match sequence against both strands of the reference
# sequence.
#
RC=0
test_name=`basename $0`
test_dir=`dirname $0`
data_dir=$test_dir/../../../data
dotter -q 246634 -v -H -f $data_dir/chr4_dna_align.gff $data_dir/chr4_ref_seq.fasta $data_dir/DA730641.fasta
# If there was an error, set RC
if [ $? -ne 0 ]
then
RC=1
fi
exit $RC
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