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EXAMPLES
This directory contains sample data that you can try out the programs with. Below are minimal incantations for each program to use this sample data.
There are more examples available in the 'test' directory.
Blixem (nucleotide mode):
blixem -t N chr4_ref_seq.fasta chr4_dna_align.gff
Blixem (protein mode):
blixem -t P chr4_ref_seq.fasta chr4_protein_align.gff
Dotter (nucleotide-nucleotide mode):
dotter chr4_ref_seq_short.fasta DA730641.fasta
Dotter (nucleotide-protein mode):
dotter chr4_ref_seq_short.fasta Q9H8G1.fasta
Dotter (protein-protein mode):
dotter chr4_translation_frame1.fasta Q9H8G1.fasta
Belvu:
belvu PF02171_seed.stock
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