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#!/bin/sh
#
# Description:
# Test Dotter in nucleotide->nucleotide mode. Tests the dot-matrix calculation as well
# as the display of transcripts and HSPs supplied via a features file.
#
# Results:
# Dotter's graphical display should start up, showing a dot-plot where strong matching regions
# between the two sequences are shown as diagonal lines. The greyramp tool can be used to adjust
# the contrast of the dot plot. Transcripts from the features file should be shown along the
# horizontal axis and HSPs from the features file can be displayed by enabling the relevant
# option in the View menu. Note that the pixelmap and HSPs will show matches against both strands
# of the reference sequence.
#
RC=0
test_name=`basename $0`
test_dir=`dirname $0`
data_dir=$test_dir/../../../data
dotter -q 246634 -f $data_dir/chr4_dna_align.gff $data_dir/chr4_ref_seq_short.fasta $data_dir/DA730641.fasta
# If there was an error, set RC
if [ $? -ne 0 ]
then
RC=1
fi
exit $RC
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