1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
|
#!/bin/sh
#
# Description:
# Test Blixem in protein mode. Features include protein matches, transcripts
# variations, polyA sites and signals
#
# Results:
# Blixem's graphical display should start up showing the alignments and transripts.
# Variations and polyA features can be displayed from the Settings dialog.
#
RC=0
test_name=`basename $0`
test_dir=`dirname $0`
data_dir=$test_dir/../../../data
blixem -t P -s 337622 -m 210623 -z 335873:338382 -n --dataset=human $data_dir/chr4_ref_seq.fasta $data_dir/chr4_protein_align.gff
# If there was an error, set RC
if [ $? -ne 0 ]
then
RC=1
fi
exit $RC
|
