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#!/bin/env python
"""Functions that provide transparent read-only access to dictzipped files
"""
# based on gzip.py from python library
import string, struct, sys, time
import zlib
import __builtin__
FTEXT, FHCRC, FEXTRA, FNAME, FCOMMENT = 1, 2, 4, 8, 16
READ, WRITE = 1, 2
def write32(output, value):
output.write(struct.pack("<l", value))
def write32u(output, value):
output.write(struct.pack("<L", value))
def read32(input):
return struct.unpack("<l", input.read(4))[0]
def open(filename, mode="rb", compresslevel=9):
return DictzipFile(filename, mode, compresslevel)
class DictzipFile:
myfileobj = None
def __init__(self, filename=None, mode=None,
compresslevel=9, fileobj=None, cachesize=2):
if fileobj is None:
fileobj = self.myfileobj = __builtin__.open(filename, mode or 'rb')
if filename is None:
if hasattr(fileobj, 'name'): filename = fileobj.name
else: filename = ''
if mode is None:
if hasattr(fileobj, 'mode'): mode = fileobj.mode
else: mode = 'rb'
if mode[0:1] == 'r':
self.mode = READ
self.filename = filename
else:
raise ValueError, "Mode " + mode + " not supported"
self.fileobj = fileobj
self._read_gzip_header()
self.pos = 0
self.cachesize = cachesize
self.cache = {}
self.cachekeys = []
def __repr__(self):
s = repr(self.fileobj)
return '<dictzip ' + s[1:-1] + ' ' + hex(id(self)) + '>'
def _read_gzip_header(self):
magic = self.fileobj.read(2)
if magic != '\037\213':
raise IOError, 'Not a gzipped file'
method = ord( self.fileobj.read(1) )
if method != 8:
raise IOError, 'Unknown compression method'
flag = ord( self.fileobj.read(1) )
# modtime = self.fileobj.read(4)
# extraflag = self.fileobj.read(1)
# os = self.fileobj.read(1)
self.fileobj.read(6)
if flag & FEXTRA:
# Read the extra field
xlen=ord(self.fileobj.read(1))
xlen=xlen+256*ord(self.fileobj.read(1))
extra = self.fileobj.read(xlen)
while 1:
l = ord(extra[2])+256*ord(extra[3])
e = extra[:4+l]
if e[:2]<>'RA':
extra=extra[4+l:]
if not extra:
raise "Missing dictzip extension"
continue
else:
break
length = ord(extra[2])+256*ord(extra[3])
ver = ord(extra[4])+256*ord(extra[5])
self.chlen = ord(extra[6])+256*ord(extra[7])
chcnt = ord(extra[8])+256*ord(extra[9])
p = 10
lens = []
for i in xrange(chcnt):
thischlen = ord(extra[p])+256*ord(extra[p+1])
p = p+2
lens.append(thischlen)
chpos = 0
self.chunks = []
for i in lens:
self.chunks.append( (chpos, i) )
chpos = chpos+i
self._lastpos = chpos
else:
raise "Missing dictzip extension"
if flag & FNAME:
# Read and discard a null-terminated string containing the filename
while (1):
s=self.fileobj.read(1)
if not s or s=='\000': break
if flag & FCOMMENT:
# Read and discard a null-terminated string containing a comment
while (1):
s=self.fileobj.read(1)
if not s or s=='\000': break
if flag & FHCRC:
self.fileobj.read(2) # Read & discard the 16-bit header CRC
self._firstpos = self.fileobj.tell()
def write(self,data):
raise ValueError, "write() not supported on DictzipFile object"
def writelines(self,lines):
raise ValueError, "writelines() not supported on DictzipFile object"
def _readchunk(self,n):
if n>=len(self.chunks):
return ''
if self.cache.has_key(n):
return self.cache[n]
self.fileobj.seek(self._firstpos+self.chunks[n][0])
s = self.fileobj.read(self.chunks[n][1])
dobj = zlib.decompressobj(-zlib.MAX_WBITS)
output = dobj.decompress(s)
del dobj
#self.cache = {} # crude hack until proper cache is done
self.cache[n] = output
self.cachekeys.append(n)
# delete the oldest filled up item in cache
if len(self.cachekeys) > self.cachesize:
try:
del self.cache[self.cachekeys[0]]
del self.cachekeys[0]
except KeyError:
pass
return output
def read(self, size=-1):
firstchunk = self.pos/self.chlen
offset = self.pos - firstchunk*self.chlen
if size == -1:
lastchunk = len(self.chunks)+1
finish = 0
npos = sys.maxint
else:
lastchunk = (self.pos+size)/self.chlen
finish = offset+size
npos = self.pos+size
buf = ""
for i in range(firstchunk, lastchunk+1):
buf = buf+self._readchunk(i)
r = buf[offset:finish]
self.pos = npos
return r
def close(self):
self.fileobj.close()
def __del__(self):
self.close()
def flush(self):
pass
def seek(self, pos, whence=0):
if whence == 0:
self.pos = pos
elif whence == 1:
self.pos = self.pos+pos
elif whence == 2:
raise "Seeking from end of file not supported"
# fixme
def tell(self):
return self.pos
def isatty(self):
return 0
def readline(self, size=-1):
if size < 0: size = sys.maxint
bufs = []
orig_size = size
oldpos = self.pos
readsize = min(100, size) # Read from the file in small chunks
while 1:
if size == 0:
return string.join(bufs, '') # Return resulting line
c = self.read(readsize)
i = string.find(c, '\n')
if i>=0:
self.pos = self.pos-len(c)+i+1
if size is not None:
# We set i=size to break out of the loop under two
# conditions: 1) there's no newline, and the chunk is
# larger than size, or 2) there is a newline, but the
# resulting line would be longer than 'size'.
if i==-1 and len(c) > size: i=size-1
elif size <= i: i = size -1
if i >= 0 or c == '':
bufs.append(c[:i+1]) # Add portion of last chunk
return string.join(bufs, '') # Return resulting line
# Append chunk to list, decrease 'size',
bufs.append(c)
size = size - len(c)
readsize = min(size, readsize * 2)
def readlines(self, sizehint=0):
# Negative numbers result in reading all the lines
if sizehint <= 0: sizehint = sys.maxint
L = []
while sizehint > 0:
line = self.readline()
if line == "": break
L.append( line )
sizehint = sizehint - len(line)
return L
def _test():
import sys
f = DictzipFile(sys.argv[1])
f.seek(32023449)
while 1:
r = f.readline()
if not r:
break
print `r`
#for i in range(1):
# r = f.read(1400000)
# if not r:
# break
# sys.stdout.write(r)
# sys.stdout.flush()
if __name__ == '__main__':
_test()
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