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export DEB_BUILD_MAINT_OPTIONS = hardening=+all
include /usr/share/dpkg/default.mk
%:
dh $@ --with python3 --sourcedirectory=src
override_dh_auto_configure:
dh_auto_configure -- --with-bamtools=/usr/
mandir=$(CURDIR)/debian/$(DEB_SOURCE)/usr/share/man/man1/
bindir=$(CURDIR)/debian/$(DEB_SOURCE)/usr/bin
override_dh_auto_install:
dh_auto_install
cp -a src/bin/sga-bam2de.pl debian/$(DEB_SOURCE)/usr/bin/sga-bam2de
cp -a src/bin/sga-astat.py debian/$(DEB_SOURCE)/usr/bin/sga-astat
override_dh_installexamples:
dh_installexamples
mkdir -p debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/examples
sed -e 's?^\(SGA_BIN=sga\).*?\1?' \
-e 's?^.*/bin/sga-align?sga-align?' \
-e 's?^.*/bin/sga-bam2de.pl?sga-bam2de?' \
-e 's?^.*/bin/sga-astat.py?sga-astat?' \
src/examples/sga-celegans.sh > debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/examples/sga-celegans.sh
override_dh_installman:
dh_installman
mkdir -p $(mandir)
PATH=/usr/lib/abyss:${PATH} \
help2man \
--version-string="$(DEB_VERSION_UPSTREAM)" \
--no-info \
--name "Make a distance estimate file from a bam file of reads aligned to contigs" \
--output $(mandir)/sga-bam2de.1 \
$(bindir)/sga-bam2de
help2man \
--no-info \
--version-string="$(DEB_VERSION_UPSTREAM)" \
--name="String Graph Assembler: de novo genome assembler that uses string graphs" \
--output $(mandir)/sga.1 \
$(bindir)/sga
help2man \
--no-info\
--version-string="$(DEB_VERSION_UPSTREAM)" \
--name="generate sga merge commands from a list of files" \
--output $(mandir)/sga-mergeDriver.1 \
$(bindir)/sga-mergeDriver
|
