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#!/usr/bin/python3
import shasta
import argparse
parser = argparse.ArgumentParser()
parser.add_argument('--readId0', type=int, required=True)
parser.add_argument('--strand0', type=int, choices=range(2), required=True)
parser.add_argument('--readId1', type=int, required=True)
parser.add_argument('--strand1', type=int, choices=range(2), required=True)
arguments = parser.parse_args()
a = shasta.Assembler()
a.accessMarkers()
a.accessMarkerGraphVertices()
a.accessMarkerGraphEdges()
a.accessAssemblyGraphVertices()
a.accessAssemblyGraphEdges()
a.colorGfaWithTwoReads(
readId0=arguments.readId0, strand0=arguments.strand0,
readId1=arguments.readId1, strand1=arguments.strand1)
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