File: ComputeReadGraphConnectedComponents.py

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shasta 0.14.0-1
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#!/usr/bin/python3

import shasta
import GetConfig

config = GetConfig.getConfig()

a = shasta.Assembler()
a.accessAlignmentData()
a.accessReadGraph()
a.computeReadGraphConnectedComponents(
    int(config['ReadGraph']['minComponentSize']))