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#!/usr/bin/python3
import os
"""
This must be run from the shasta directory.
It expects to see a conf and src directory.
This creates shasta/src/ConfigurationTable.cpp which contains
the definition of shasta::configurationTable,
a map that map configuration names to strings.
The file will be overwritten if it exists.
Each entry in the table corresponds to a file in shasta/conf.
"""
# Check that we have the conf and src directories.
if not (os.path.isdir('conf') and os.path.isdir('src')):
raise Exception('Must run from the shasta directory')
# The list of configurations that will included in the table.
# Each of them must have a corresponding file in
# the conf directory, with the same name plus a .conf extension.
# Add them in approximately chronological order.
configurations = [
'Nanopore-Dec2019',
'Nanopore-UL-Dec2019',
'Nanopore-Sep2020',
'Nanopore-UL-Sep2020',
'Nanopore-UL-iterative-Sep2020',
'Nanopore-OldGuppy-Sep2020',
'Nanopore-Plants-Apr2021',
'Nanopore-Oct2021',
'Nanopore-UL-Oct2021',
'HiFi-Oct2021',
'Nanopore-UL-Jan2022',
'Nanopore-Phased-Jan2022',
'Nanopore-UL-Phased-Jan2022',
'Nanopore-May2022',
'Nanopore-Phased-May2022',
'Nanopore-UL-May2022',
'Nanopore-UL-Phased-May2022',
'Nanopore-Human-SingleFlowcell-May2022',
'Nanopore-Human-SingleFlowcell-Phased-May2022',
'Nanopore-UL-Phased-Nov2022',
'Nanopore-R10-Fast-Nov2022',
'Nanopore-R10-Slow-Nov2022',
'Nanopore-Phased-R10-Fast-Nov2022',
'Nanopore-Phased-R10-Slow-Nov2022',
'Nanopore-ncm23-May2024',
'Nanopore-r10.4.1_e8.2-400bps_sup-Herro-Sep2024',
'Nanopore-r10.4.1_e8.2-400bps_sup-Raw-Sep2024',
'Nanopore-r10.4.1_e8.2-400bps_sup-Herro-Jan2025',
'Nanopore-r10.4.1_e8.2-400bps_sup-Raw-Jan2025',
]
# Before doing anything, check that we have all the files.
for configuration in configurations:
fileName = 'conf/' + configuration + '.conf'
if not os.path.isfile(fileName):
raise Exception(fileName + ' not found.')
# Open the output file.
out = open('src/ConfigurationTable.cpp', 'w')
# Write the initial portion of the file.
out.write("""
#include "ConfigurationTable.hpp"
namespace shasta {
const std::vector< pair<string, string> > configurationTable = {
""")
# Write the configurations.
for i in range(len(configurations)):
configuration = configurations[i]
fileName = 'conf/' + configuration + '.conf'
configFile = open(fileName, 'r')
out.write(' {"' + configuration + '", R"zzz(')
out.write(configFile.read())
out.write(')zzz"}');
if not i == len(configurations) - 1:
out.write(',')
out.write('\n');
# Write the final portion of the file.
out.write(' };\n}\n')
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