File: CreateMarkerGraphEdgesStrict.py

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shasta 0.14.0-1
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#!/usr/bin/python3

import shasta
import GetConfig

config = GetConfig.getConfig()


a = shasta.Assembler()
a.accessMarkers()
a.accessMarkerGraphVertices()
a.createMarkerGraphEdgesStrict(
    minEdgeCoverage = int(config['MarkerGraph']['minEdgeCoverage']),
    minEdgeCoveragePerStrand = int(config['MarkerGraph']['minEdgeCoveragePerStrand']))