File: CreateReadGraph.py

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shasta 0.14.0-1
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#!/usr/bin/python3

import os
import shasta
import GetConfig

# Read the config file.
config = GetConfig.getConfig()

# Initialize the assembler and access what we need.
a = shasta.Assembler()
a.accessMarkers()
a.accessAlignmentDataReadWrite()

# Create the global read graph.
a.createReadGraph(
    maxAlignmentCount = int(config['ReadGraph']['maxAlignmentCount']))