File: FlagPrimaryMarkerGraphEdges.py

package info (click to toggle)
shasta 0.14.0-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 29,636 kB
  • sloc: cpp: 82,262; python: 2,348; makefile: 222; sh: 143
file content (18 lines) | stat: -rw-r--r-- 406 bytes parent folder | download | duplicates (2) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
 
#!/usr/bin/python3

import shasta
import GetConfig

# Read the config file.
config = GetConfig.getConfig()
        
a = shasta.Assembler()
a.accessMarkers()
a.accessMarkerGraphVertices()
a.accessMarkerGraphEdges(True)
a.accessDisjointSetsHistogram()
a.flagPrimaryMarkerGraphEdges(
    int(config['Assembly']['mode3.minPrimaryCoverage']), 
    int(config['Assembly']['mode3.maxPrimaryCoverage']), 
    0)