File: GetReadId.py

package info (click to toggle)
shasta 0.14.0-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 29,636 kB
  • sloc: cpp: 82,262; python: 2,348; makefile: 222; sh: 143
file content (12 lines) | stat: -rwxr-xr-x 235 bytes parent folder | download | duplicates (3) 
1
2
3
4
5
6
7
8
9
10
11
12
 
#!/usr/bin/python3

import shasta
import argparse

parser = argparse.ArgumentParser()
parser.add_argument('readName', type=str)
arguments = parser.parse_args()

a = shasta.Assembler()
print(a.getReads().getReadId(arguments.readName))