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#!/usr/bin/python3
import shasta
import GetConfig
config = GetConfig.getConfig()
simplifyString = config['MarkerGraph']['simplifyMaxLength']
if simplifyString:
simplifyList = [int(s) for s in simplifyString.split(',')]
else:
simplifyList = []
a = shasta.Assembler()
a.accessMarkers()
a.accessMarkerGraphVertices()
a.accessMarkerGraphEdges(accessEdgesReadWrite = True)
a.accessMarkerGraphReverseComplementVertex()
a.accessMarkerGraphReverseComplementEdge()
a.simplifyMarkerGraph(
maxLength = simplifyList,
debug = True)
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