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#!/usr/bin/python3
import shasta
import sys
helpMessage = """
Invoke with two arguments, the id and strand of the read.
"""
if not len(sys.argv) == 3:
print(helpMessage)
exit(1)
readId = int(sys.argv[1])
strand = int(sys.argv[2])
if not (strand==0 or strand==1):
print('Invalid strand')
print(helpMessage)
exit(1)
fileName = 'Markers-' + str(readId) + '-' + str(strand) + '.csv'
a = shasta.Assembler()
a.accessKmers()
a.accessMarkers()
a.writeMarkers(readId=readId, strand=strand, fileName=fileName)
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