1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
|
from tools.load import LoadMatrix
from sg import sg
lm=LoadMatrix()
traindna=lm.load_dna('../data/fm_train_dna.dat')
testdna=lm.load_dna('../data/fm_test_dna.dat')
parameter_list=[[traindna,testdna,10],
[traindna,testdna,11]]
def kernel_linearstring (fm_train_dna=traindna,fm_test_dna=testdna,
size_cache=10):
sg('set_features', 'TRAIN', fm_train_dna, 'DNA')
sg('set_features', 'TEST', fm_test_dna, 'DNA')
sg('set_kernel', 'LINEAR', 'CHAR', size_cache)
km=sg('get_kernel_matrix', 'TRAIN')
km=sg('get_kernel_matrix', 'TEST')
return km
if __name__=='__main__':
print('LinearString')
kernel_linearstring(*parameter_list[0])
|
