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from tools.load import LoadMatrix
from sg import sg
lm=LoadMatrix()
traindna=lm.load_dna('../data/fm_train_dna.dat')
testdna=lm.load_dna('../data/fm_test_dna.dat')
parameter_list=[[traindna,testdna,10,3,0,'n',False,'FULL'],
[traindna,testdna,11,4,0,'n',False,'FULL']]
def preproc_sortulongstring (fm_train_dna=traindna,fm_test_dna=testdna,
size_cache=10,order=3,gap=0,reverse='n',
use_sign=False,normalization='FULL'):
sg('add_preproc', 'SORTULONGSTRING')
sg('set_features', 'TRAIN', fm_train_dna, 'DNA')
sg('convert', 'TRAIN', 'STRING', 'CHAR', 'STRING', 'ULONG', order, order-1, gap, reverse)
sg('attach_preproc', 'TRAIN')
sg('set_features', 'TEST', fm_test_dna, 'DNA')
sg('convert', 'TEST', 'STRING', 'CHAR', 'STRING', 'ULONG', order, order-1, gap, reverse)
sg('attach_preproc', 'TEST')
sg('set_kernel', 'COMMSTRING', 'ULONG', size_cache, use_sign, normalization)
km=sg('get_kernel_matrix', 'TRAIN')
km=sg('get_kernel_matrix', 'TEST')
return km
if __name__=='__main__':
print('CommUlongString')
preproc_sortulongstring(*parameter_list[0])
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