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/* $Id: sim4b1.h,v 1.22 2008/03/31 22:58:27 c4chris Exp $
*
* Christian Iseli, LICR ITO, Christian.Iseli@licr.org
*
* Copyright (c) 2001-2004 Swiss Institute of Bioinformatics.
* Copyright (C) 1998-2001 Liliana Florea.
*/
#ifndef SIM4B1_H
#define SIM4B1_H
void free_align(edit_script_list_p_t);
void print_exons(collec_p_t, int);
void SIM4(hash_env_p_t, seq_p_t, collec_p_t);
void init_encoding(void);
void init_hash_env(hash_env_p_t, unsigned int, uchar *, unsigned int);
void free_hash_env(hash_env_p_t);
void bld_table(hash_env_p_t);
void init_col(collec_p_t, unsigned int);
#endif /* SIM4B1_H */
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