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/*
* sideRETRO - A pipeline for detecting Somatic Insertion of DE novo RETROcopies
* Copyright (C) 2019-2020 Thiago L. A. Miller <tmiller@mochsl.org.br
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef GZ_H
#define GZ_H
#include <stdlib.h>
#include <zlib.h>
struct _GzFile
{
gzFile fp;
const char *filename;
char *buf;
size_t buf_size;
size_t num_line;
};
typedef struct _GzFile GzFile;
GzFile * gz_open_for_reading (const char *path);
void gz_close (GzFile *gz);
int gz_getline (GzFile *gz, char **lineptr, size_t *n);
#define gz_get_fp(gz) ((gz)->fp)
#define gz_get_filename(gz) ((gz)->filename)
#define gz_get_num_line(gz) ((gz)->num_line)
#endif /* gz.h */
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