1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
/*
* sideRETRO - A pipeline for detecting Somatic Insertion of DE novo RETROcopies
* Copyright (C) 2019-2020 Thiago L. A. Miller <tmiller@mochsl.org.br
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef VCF_H
#define VCF_H
#include "db.h"
struct _VCFOption
{
long near_gene_dist;
float orientation_error;
const char *fasta_file;
};
typedef struct _VCFOption VCFOption;
void vcf (sqlite3 *db, const char *output_file, VCFOption *opt);
#endif /* vcf.h */
|
