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Description: Fix gcc warnings.
Author: Michael Bienia <geser@ubuntu.com>
Index: sift/src/Alignment.c
===================================================================
--- sift.orig/src/Alignment.c
+++ sift/src/Alignment.c
@@ -766,7 +766,7 @@ read_psiblast_header_until_first (FILE*
void
read_psiblast_header_until_first_alignment (FILE* fp)
{
- char line[LARGE_BUFF_LENGTH];
+ char line[LINE_LEN > LARGE_BUFF_LENGTH ? LINE_LEN : LARGE_BUFF_LENGTH];
read_psiblast_header_until_first (fp);
@@ -783,7 +783,7 @@ read_psiblast_header_until_first_alignme
int
read_psiblast_header_until_first_no_error (FILE* fp,int return_error )
{
- char line[MAXLEN];
+ char line[LINE_LEN];
while (!feof (fp) && fgets (line, LINE_LEN, fp) != NULL &&
strstr (line, "Sequences producing significant alignments") == NULL)
Index: sift/src/PN_convert.c
===================================================================
--- sift.orig/src/PN_convert.c
+++ sift/src/PN_convert.c
@@ -2032,7 +2032,7 @@ void init_frq_qij()
else
{
fprintf (stderr, "Can't open file '%s': %s.\n", qijname, strerror(errno) );
- fprintf (stderr, "Current dir:\n", qijname );
+ fprintf (stderr, "Current dir: %s\n", qijname );
system( "pwd" );
exit (-1);
}
Index: sift/src/Psiblast.c
===================================================================
--- sift.orig/src/Psiblast.c
+++ sift/src/Psiblast.c
@@ -302,7 +302,7 @@ get_top_seq (char next_seq_to_add[], Has
FILE* psiblastfp;
char name[KEY_WIDTH];
char *strptr;
- char line[LARGE_BUFF_LENGTH];
+ char line[LINE_LEN];
if ((psiblastfp = fopen (psiblastres_file, "r")) == NULL)
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