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/* COPYRIGHT 1997 Fred Hutchinson Cancer Research Center, Seattle, WA USA */
/* blockmap.h Used by block_vis.c */
struct block_pos_struct {
char code ; /* the block's code */
int start ; /* the block's start position */
int end ; /* the block's end position */
};
typedef struct block_pos_struct block_pos ;
struct seq_map_struct {
char seq_name[SMALL_BUFF_LENGTH] ; /* sequence name */
int seq_len ; /* sequence length */
int num_blocks ; /* number of blocks in this sequence */
block_pos *blocks ; /* pointer to array of block positions */
};
typedef struct seq_map_struct sequence_map ;
struct blocks_map_struct {
char block_family[SMALL_BUFF_LENGTH] ; /* the blocks family code */
char description[SMALL_BUFF_LENGTH] ; /* the family description */
char id[SMALL_BUFF_LENGTH] ; /* the short family description */
int num_seqs ; /* number of sequences */
int tot_num_blocks ; /* number of blocks */
int max_seq_len ; /* longest sequence length */
sequence_map *seq_map ; /* pointer to array of sequence maps */
};
typedef struct blocks_map_struct blocks_map ;
#define MAXNAME 80 /* Maximum file name length */
#define BLOCKS_ALLOC 10 /* Initial number of block data structures
to be allocated to blocks family array. */
#define OK 0
#define ERROR 1
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