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/* (C) Copyright 1993, Fred Hutchinson Cancer Research Center */
/* Use, modification or distribution of these programs is subject to */
/* the terms of the non-commercial licensing agreement in license.h. */
/* pattern.h: */
/* Written by: Bill Alford */
/* Change log information is at the end of the file. */
#ifndef PATTERN_H_
#define PATTERN_H_
/*
* Exported variables and data structures
*/
extern Boolean UsePatterns; /* initially FALSE */
typedef struct pattern_residue_struct PatternResidue;
struct pattern_residue_struct {
int offset; /* the offset from the current position,
the current position is the previous
PatternResidue or the starting location */
int num_residues; /* the number of residues */
char *residues; /* the residues */
PatternResidue *next; /* the next pattern res. in the list */
};
struct pattern_struct {
int beg_offset; /* the offset from here to the beginning of
the sequence */
int num_residues; /* the number of sub residues */
PatternResidue *pat; /* the list of residues in the pattern */
};
typedef struct pattern_struct Pattern;
extern void scan_patterns();
extern Boolean pattern_matches();
extern int residue_compare_function();
#endif /* PATTERN_H_ */
/* Change log information follows.
* $Log: pattern.h,v $
* Revision 1.1 2011-05-24 16:32:31 gsims
* *** empty log message ***
*
* Revision 1.2 2011-02-23 04:43:46 gsims
* *** empty log message ***
*
* Revision 1.1.1.1 2011-02-22 22:16:02 gsims
* Initial Import of sift 4.0.4
*
* Revision 2.2010 1995/07/28 23:47:14 billa
* Added new convert method and pattern matching and minor updates merged.
*
*/
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