1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
|
/************************************************************************
*
* Copyright (C) 2023-2025 IRCAD France
*
* This file is part of Sight.
*
* Sight is free software: you can redistribute it and/or modify it under
* the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Sight is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with Sight. If not, see <https://www.gnu.org/licenses/>.
*
***********************************************************************/
#include "fiducials_reader_writer_test.hpp"
#include <core/os/temp_path.hpp>
#include <data/image_series.hpp>
#include <io/dicom/reader/file.hpp>
#include <io/dicom/writer/file.hpp>
#include <utest_data/data.hpp>
CPPUNIT_TEST_SUITE_REGISTRATION(sight::io::dicom::ut::fiducials_reader_writer_test);
namespace sight::io::dicom::ut
{
//------------------------------------------------------------------------------
void fiducials_reader_writer_test::basic_test()
{
auto original = std::make_shared<data::series_set>();
auto reader = std::make_shared<io::dicom::reader::file>();
reader->set_object(original);
reader->set_folder(utest_data::dir() / "us/Enhanced US Volume Storage/GE, 3D+t, lossy JPEG");
{
const auto observer = std::make_shared<core::progress::observer>("FIDUCIALS Reader Test");
CPPUNIT_ASSERT_NO_THROW(reader->read(observer));
}
CPPUNIT_ASSERT_EQUAL(std::size_t(1), original->size());
auto original_image_series = std::dynamic_pointer_cast<data::image_series>(original->at(0));
CPPUNIT_ASSERT(original_image_series);
auto original_fiducials_series = original_image_series->get_fiducials();
CPPUNIT_ASSERT(original_fiducials_series->get_fiducial_sets().empty());
original_fiducials_series->set_content_date("1");
original_fiducials_series->set_content_time("2");
original_fiducials_series->set_instance_number(3);
original_fiducials_series->set_content_label("4");
original_fiducials_series->set_content_description("5");
original_fiducials_series->set_content_creator_name("6");
data::fiducials_series::fiducial_set fiducial_set;
data::fiducials_series::referenced_image referenced_image;
referenced_image.referenced_sop_class_uid =
data::dicom::sop::get(original_image_series->get_sop_keyword()).m_uid;
referenced_image.referenced_sop_instance_uid = original_image_series->get_sop_instance_uid();
referenced_image.referenced_frame_number = {7};
referenced_image.referenced_segment_number = {8};
fiducial_set.referenced_image_sequence = {referenced_image};
fiducial_set.frame_of_reference_uid = "9";
data::fiducials_series::fiducial fiducial;
fiducial.shape_type = data::fiducials_series::shape::point;
fiducial.fiducial_description = "10";
fiducial.fiducial_identifier = "11";
data::fiducials_series::graphic_coordinates_data graphic_coordinates_data;
graphic_coordinates_data.referenced_image_sequence.referenced_sop_class_uid = data::dicom::sop::get(
original_image_series->get_sop_keyword()
).m_uid;
graphic_coordinates_data.referenced_image_sequence.referenced_sop_instance_uid =
original_image_series->get_sop_instance_uid();
graphic_coordinates_data.referenced_image_sequence.referenced_frame_number = {12};
graphic_coordinates_data.referenced_image_sequence.referenced_segment_number = {13};
graphic_coordinates_data.graphic_data = {{.x = 14, .y = 15}};
fiducial.graphic_coordinates_data_sequence = {graphic_coordinates_data};
fiducial.fiducial_uid = "16";
fiducial.contour_data = {{.x = 17, .y = 18, .z = 19}};
fiducial_set.fiducial_sequence.push_back(fiducial);
fiducial_set.group_name = "20";
original_fiducials_series->set_sop_instance_uid(
std::string(
data::dicom::sop::get(
data::dicom::sop::Keyword::
SpatialFiducialsStorage
).m_uid
) + ".0"
);
original_fiducials_series->append_fiducial_set(fiducial_set);
const core::os::temp_dir folder;
auto writer = std::make_shared<io::dicom::writer::file>();
writer->set_object(original);
writer->set_folder(folder);
{
const auto observer = std::make_shared<core::progress::observer>("FIDUCIALS Writer Test");
CPPUNIT_ASSERT_NO_THROW(writer->write(observer));
}
auto actual = std::make_shared<data::series_set>();
reader->set_object(actual);
reader->set_folder(folder);
{
const auto observer = std::make_shared<core::progress::observer>("FIDUCIALS Reader Test");
CPPUNIT_ASSERT_NO_THROW(reader->read(observer));
}
CPPUNIT_ASSERT_EQUAL(std::size_t(1), actual->size());
auto actual_image_series = std::dynamic_pointer_cast<data::image_series>(actual->at(0));
CPPUNIT_ASSERT(actual_image_series);
auto actual_fiducials_series = actual_image_series->get_fiducials();
CPPUNIT_ASSERT(actual_fiducials_series);
std::vector<data::fiducials_series::fiducial_set> actual_fiducial_sets =
actual_fiducials_series->get_fiducial_sets();
CPPUNIT_ASSERT_EQUAL(std::size_t(1), actual_fiducial_sets.size());
CPPUNIT_ASSERT_EQUAL(original_fiducials_series->get_content_date(), actual_fiducials_series->get_content_date());
CPPUNIT_ASSERT_EQUAL(original_fiducials_series->get_content_time(), actual_fiducials_series->get_content_time());
CPPUNIT_ASSERT(original_fiducials_series->get_instance_number() == actual_fiducials_series->get_instance_number());
CPPUNIT_ASSERT_EQUAL(original_fiducials_series->get_content_label(), actual_fiducials_series->get_content_label());
CPPUNIT_ASSERT_EQUAL(
original_fiducials_series->get_content_description(),
actual_fiducials_series->get_content_description()
);
CPPUNIT_ASSERT_EQUAL(
original_fiducials_series->get_content_creator_name(),
actual_fiducials_series->get_content_creator_name()
);
CPPUNIT_ASSERT(fiducial_set == actual_fiducial_sets[0]);
}
} // namespace sight::io::dicom::ut
|
