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/************************************************************************
*
* Copyright (C) 2018-2025 IRCAD France
* Copyright (C) 2018-2019 IHU Strasbourg
*
* This file is part of Sight.
*
* Sight is free software: you can redistribute it and/or modify it under
* the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Sight is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with Sight. If not, see <https://www.gnu.org/licenses/>.
*
***********************************************************************/
#include "series_puller.hpp"
#include "detail/query.hpp"
#include <core/com/signal.hxx>
#include <core/com/slots.hxx>
#include <core/progress/observer.hpp>
#include <core/tools/system.hpp>
#include <data/image_series.hpp>
#include <io/dicom/helper/series.hpp>
#include <io/dicom/reader/file.hpp>
#include <io/http/exceptions/base.hpp>
#include <io/http/helper/series.hpp>
#include <io/http/request.hpp>
#include <service/extension/config.hpp>
#include <service/op.hpp>
#include <ui/__/dialog/message.hpp>
#include <ui/__/dialog/progress.hpp>
#include <ui/__/preferences.hpp>
#include <qdebug.h>
#include <algorithm>
#include <filesystem>
namespace sight::module::io::dicomweb
{
//------------------------------------------------------------------------------
series_puller::series_puller() noexcept :
has_monitors(m_signals)
{
}
//------------------------------------------------------------------------------
void series_puller::configuring()
{
}
//------------------------------------------------------------------------------
void series_puller::starting()
{
// Create temporary series_set
m_tmp_series_set = std::make_shared<data::series_set>();
}
//------------------------------------------------------------------------------
void series_puller::stopping()
{
{
const auto series_set = m_series_set.lock();
const auto scoped_emitter = series_set->scoped_emit();
// Delete old series from the series_set.
series_set->clear();
}
}
//------------------------------------------------------------------------------
void series_puller::updating()
{
if(m_is_pulling)
{
// Display a message to inform the user that the service is already pulling data.
sight::ui::dialog::message message_box;
message_box.set_title("Pulling Series");
message_box.set_message(
"The service is already pulling data. Please wait until the pulling is done "
"before sending a new pull request."
);
message_box.set_icon(ui::dialog::message::info);
message_box.add_button(ui::dialog::message::ok);
message_box.show();
}
else
{
const auto selected_series = m_selected_series.lock();
if(selected_series->empty())
{
// Display a message to inform the user that there is no series selected.
sight::ui::dialog::message message_box;
message_box.set_title("Pulling Series");
message_box.set_message("Unable to pull series, there is no series selected. ");
message_box.set_icon(ui::dialog::message::info);
message_box.add_button(ui::dialog::message::ok);
message_box.show();
}
else
{
this->pull_series();
}
}
}
//------------------------------------------------------------------------------
void series_puller::pull_series()
{
// Catch any errors
try
{
// Clear map of Dicom series being pulled
m_pulling_dicom_series_map.clear();
// Set pulling boolean to true
m_is_pulling = true;
// Reset Counters
m_series_index = 0;
std::size_t instance_count = 0;
const auto selected_series = m_selected_series.lock();
// Find which selected series must be pulled
dicom_series_container_t pull_series_vector;
dicom_series_container_t selected_series_vector;
auto it = selected_series->cbegin();
for( ; it != selected_series->cend() ; ++it)
{
data::series::sptr series = std::dynamic_pointer_cast<data::series>(*it);
// Check if the series must be pulled
if(series
&& std::ranges::find(
m_local_series,
series->get_series_instance_uid()
) == m_local_series.end())
{
// Add series in the pulling series map
m_pulling_dicom_series_map[series->get_series_instance_uid()] = series;
pull_series_vector.push_back(series);
instance_count += static_cast<std::size_t>(series->get_instance_number().value());
}
selected_series_vector.push_back(series);
}
// Pull series
if(!pull_series_vector.empty())
{
auto progress = std::make_shared<core::progress::observer>("Pull series", instance_count);
this->async_emit(core::progress::has_monitors::signals::MONITOR_CREATED, progress->get_sptr());
std::size_t done = 0;
/// GET
const auto& series_instances_ui_ds =
sight::io::http::helper::series::to_series_instance_uid_container(pull_series_vector);
for(const std::string& series_instances_uid : series_instances_ui_ds)
{
// Find Series according to SeriesInstanceUID
QJsonObject query;
query.insert("SeriesInstanceUID", series_instances_uid.c_str());
QJsonObject body;
body.insert("Level", "Series");
body.insert("Query", query);
body.insert("Limit", 0);
/// Url PACS
const std::string pacs_server("http://" + *m_server_hostname + ":" + std::to_string(*m_server_port));
/// Orthanc "/tools/find" route. POST a JSON to get all Series corresponding to the SeriesInstanceUID.
sight::io::http::request::sptr request = sight::io::http::request::New(
pacs_server + "/tools/find"
);
QByteArray series_answer;
try
{
series_answer = m_client_qt.post(request, QJsonDocument(body).toJson());
}
catch(sight::io::http::exceptions::host_not_found& exception)
{
std::stringstream ss;
ss << "Host not found:\n"
<< " Please check your configuration: \n"
<< "Pacs host name: " << *m_server_hostname << "\n"
<< "Pacs port: " << *m_server_port << "\n";
sight::module::io::dicomweb::series_puller::display_error_message(ss.str());
SIGHT_WARN(exception.what());
}
QJsonDocument json_response = QJsonDocument::fromJson(series_answer);
const QJsonArray& series_array = json_response.array();
const auto series_array_size = series_array.count();
for(auto i = 0 ; i < series_array_size ; ++i)
{
const std::string& series_uid = series_array.at(i).toString().toStdString();
/// GET all Instances by Series.
const std::string& instances_url(std::string(pacs_server) + "/series/" + series_uid);
const QByteArray& instances_answer =
m_client_qt.get(sight::io::http::request::New(instances_url));
json_response = QJsonDocument::fromJson(instances_answer);
const QJsonObject& json_obj = json_response.object();
const QJsonArray& instances_array = json_obj["Instances"].toArray();
qDebug() << json_obj;
const auto instances_array_size = instances_array.count();
for(auto j = 0 ; j < instances_array_size ; ++j)
{
// This the instance ID on the server, which may be different from the InstanceUID
const std::string& instance_server_id = instances_array.at(j).toString().toStdString();
// Retrieve the SOP Instance UID
const auto instance_uid = detail::query_instance_uid(
pacs_server,
instance_server_id,
m_client_qt
);
/// GET DICOM Instance file.
const std::string instance_url(pacs_server + "/instances/" + instance_server_id + "/file");
const auto path = sight::io::dicom::helper::series::get_path(
series_instances_uid,
instance_uid
);
try
{
m_client_qt.get_file(sight::io::http::request::New(instance_url), path);
}
catch(sight::io::http::exceptions::content_not_found& exception)
{
std::stringstream ss;
ss << "Content not found: \n"
<< "Unable to download the DICOM instance. \n";
sight::module::io::dicomweb::series_puller::display_error_message(ss.str());
SIGHT_WARN(exception.what());
}
progress->done_work(++done);
}
}
}
}
// Read series if there is no error
if(m_is_pulling)
{
this->read_local_series(selected_series_vector);
}
// Set pulling boolean to false
m_is_pulling = false;
}
catch(sight::io::http::exceptions::base& exception)
{
std::stringstream ss;
ss << "Unknown error.";
sight::module::io::dicomweb::series_puller::display_error_message(ss.str());
SIGHT_WARN(exception.what());
m_is_pulling = false;
}
}
//------------------------------------------------------------------------------
void series_puller::read_local_series(dicom_series_container_t _selected_series)
{
const auto dest_series_set = m_series_set.lock();
const auto scoped_emitter = dest_series_set->scoped_emit();
// Read only series that are not in the series_set
const instance_uid_container_t& already_loaded_series =
sight::io::http::helper::series::to_series_instance_uid_container(dest_series_set->get_content());
for(const auto& series : _selected_series)
{
SIGHT_ASSERT("DicomSeries should not be null !", series);
const std::string& selected_series_uid = series->get_series_instance_uid();
// Add the series to the local series vector
if(std::ranges::find(m_local_series, selected_series_uid) == m_local_series.end())
{
m_local_series.push_back(selected_series_uid);
}
// Check if the series is loaded
if(std::ranges::find(
already_loaded_series,
selected_series_uid
) == already_loaded_series.cend())
{
// Clear temporary series
m_tmp_series_set->clear();
auto path = sight::io::dicom::helper::series::get_path(*series);
auto reader = std::make_shared<sight::io::dicom::reader::file>();
reader->set_object(dest_series_set.get_shared());
reader->set_folder({path.string()});
auto observer = std::make_shared<sight::core::progress::observer>("Read image series");
this->async_emit(core::progress::has_monitors::signals::MONITOR_CREATED, observer->get_sptr());
reader->read(observer);
// Merge series
std::copy(m_tmp_series_set->cbegin(), m_tmp_series_set->cend(), sight::data::inserter(*dest_series_set));
}
}
}
//------------------------------------------------------------------------------
void series_puller::display_error_message(const std::string& _message)
{
SIGHT_WARN("Error: " + _message);
sight::ui::dialog::message message_box;
message_box.set_title("Error");
message_box.set_message(_message);
message_box.set_icon(ui::dialog::message::critical);
message_box.add_button(ui::dialog::message::ok);
message_box.show();
}
//------------------------------------------------------------------------------
} // namespace sight::module::io::dicomweb
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