1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
|
Version 1.1.3:
* Make local gapless alignment function linear in memory consumption
(Gayathri Jayaraman); related to this, remove "maxfraglen" and the "-l"
option, since these are no longer needed. The function continues to
be quadratic in time.
* Bugfix in gapless alignment function (off-by-one error) (Gayathri Jayaraman)
* Another small improvement to best_match()
* Fix string-bounds bug relating to pre-fragmentation of sequences
Version 1.1.2:
* a trivial change to best_match() that increases the speed by over 30%
with larger input files
* include NetBSD->FreeBSD version of getopt_long(), for compatibility
on platforms that lack it
Version 1.1.1:
* fix compilation error on powerpc (and maybe other platforms)
* include manpage contributed by Charles Plessy
* document -l option in NOTES and printhelp.c
Version 1.1: rewrite in C, a few bugfixes and improvements
described in README
Version 1.0: first release, in Objective Caml
|