File: run-unit-test

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sigma-align 1.1.3-9
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#!/bin/bash
set -e

pkg=sigma-align
PACKAGE=last-align

if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp /usr/share/doc/${PACKAGE}/examples/* -a "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"
gunzip -r *

for file in *.fa
do
	cat ${file} >> input.fa
done

sigma input.fa -C
echo
echo 'PASS'
echo '--------------------------------'