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#!/usr/bin/env python
# /*##########################################################################
#
# Copyright (c) 2016-2023 European Synchrotron Radiation Facility
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#
# ###########################################################################*/
"""
Example to show the use of :class:`~silx.gui.plot.ImageView.ImageView` widget.
It can be used to open an EDF or TIFF file from the shell command line.
To view an image file with the current installed silx library:
``python examples/imageview.py <file to open>``
To get help:
``python examples/imageview.py -h``
"""
__authors__ = ["T. Vincent"]
__license__ = "MIT"
__date__ = "08/11/2018"
import logging
import numpy
import time
import threading
from silx.gui.utils import concurrent
from silx.gui.plot.ImageView import ImageViewMainWindow
from silx.gui import qt
logging.basicConfig()
logger = logging.getLogger(__name__)
Nx = 150
Ny = 50
class UpdateThread(threading.Thread):
"""Thread updating the image of a :class:`~sil.gui.plot.Plot2D`
:param plot2d: The Plot2D to update."""
def __init__(self, imageview):
self.imageview = imageview
self.running = False
self.future_result = None
super(UpdateThread, self).__init__()
def createImage(self, x0: float = 0.0, y0: float = 0.0):
# width of peak
sigma_x = 0.15
sigma_y = 0.25
# x and y positions
x = numpy.linspace(-1.5, 1.5, Nx)
y = numpy.linspace(-1.0, 1.0, Ny)
xv, yv = numpy.meshgrid(x, y)
signal = numpy.exp(
-((xv - x0) ** 2 / sigma_x**2 + (yv - y0) ** 2 / sigma_y**2)
)
# add noise
signal += 0.3 * numpy.random.random(size=signal.shape)
return signal
def start(self):
"""Start the update thread"""
self.running = True
super(UpdateThread, self).start()
def run(self):
"""Method implementing thread loop that updates the plot
It produces an image every 10 ms or so, and
either updates the plot or skip the image
"""
x0, y0 = 0.0, 0.0
while self.running:
time.sleep(0.01)
signal = self.createImage(x0, y0)
x0 += 0.05 * (numpy.random.random() - 0.5)
y0 += 0.05 * (numpy.random.random() - 0.5)
# If previous frame was not added to the plot yet, skip this one
if self.future_result is None or self.future_result.done():
# plot the data asynchronously, and
# keep a reference to the `future` object
self.future_result = concurrent.submitToQtMainThread(
self.imageview.setImage, signal, resetzoom=False
)
def stop(self):
"""Stop the update thread"""
self.running = False
self.join(2)
def main(argv=None):
"""Display an image from a file in an :class:`ImageView` widget.
:param argv: list of command line arguments or None (the default)
to use sys.argv.
:type argv: list of str
:return: Exit status code
:rtype: int
:raises IOError: if no image can be loaded from the file
"""
import argparse
import fabio
from fabio.fabioimage import FabioImage
# Command-line arguments
parser = argparse.ArgumentParser(description="Browse the images of an EDF file.")
parser.add_argument(
"-o",
"--origin",
nargs=2,
type=float,
default=(0.0, 0.0),
help="""Coordinates of the origin of the image: (x, y).
Default: 0., 0.""",
)
parser.add_argument(
"-s",
"--scale",
nargs=2,
type=float,
default=(1.0, 1.0),
help="""Scale factors applied to the image: (sx, sy).
Default: 1., 1.""",
)
parser.add_argument(
"-l",
"--log",
action="store_true",
help="Use logarithm normalization for colormap, default: Linear.",
)
parser.add_argument("filename", nargs="?", help="Filename of the image to open")
parser.add_argument(
"--live", action="store_true", help="Live update of a generated image"
)
args = parser.parse_args(args=argv)
global app # QApplication must be global to avoid seg fault on quit
app = qt.QApplication([])
sys.excepthook = qt.exceptionHandler
mainWindow = ImageViewMainWindow()
mainWindow.setAttribute(qt.Qt.WA_DeleteOnClose)
mainWindow.setFocus(qt.Qt.OtherFocusReason)
mainWindow.setKeepDataAspectRatio(True)
if args.log: # Use log normalization by default
colormap = mainWindow.getDefaultColormap()
colormap.setNormalization(colormap.LOGARITHM)
if args.live:
# Start updating the plot
updateThread = UpdateThread(mainWindow)
updateThread.start()
mainWindow.setImage(updateThread.createImage())
mainWindow.show()
try:
return app.exec()
finally:
updateThread.stop()
# Open/create input image data
if args.filename:
image = fabio.open(args.filename)
else:
logger.warning("No image file provided, displaying dummy data")
size = 512
xx, yy = numpy.ogrid[-size:size, -size:size]
data = numpy.cos(xx / (size // 5)) + numpy.cos(yy / (size // 5))
data = numpy.random.poisson(numpy.abs(data))
image = FabioImage(data)
mainWindow.setImage(image.data, origin=args.origin, scale=args.scale)
if image.nframes > 1:
# Add a toolbar for multi-frame EDF support
multiFrameToolbar = qt.QToolBar("Multi-frame")
multiFrameToolbar.addWidget(qt.QLabel("Frame [0-%d]:" % (image.nframes - 1)))
spinBox = qt.QSpinBox()
spinBox.setRange(0, image.nframes - 1)
def updateImage(index):
mainWindow.setImage(
image.get_frame(index).data,
origin=args.origin,
scale=args.scale,
reset=False,
)
spinBox.valueChanged[int].connect(updateImage)
multiFrameToolbar.addWidget(spinBox)
mainWindow.addToolBar(multiFrameToolbar)
mainWindow.show()
return app.exec()
if __name__ == "__main__":
import sys
sys.exit(main(argv=sys.argv[1:]))
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