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#!/bin/bash
set -e
pkg="sim4"
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
fi
cp -a /usr/share/doc/${pkg}/examples/* $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
gunzip -r *
echo "TEST START"
/usr/bin/sim4 sample.cdna.fasta sample.gen.fasta
/usr/bin/sim4 sample.cdna.fasta sample.gen.fasta A=1 P=1
/usr/bin/sim4 sample.cdna.fasta sample.gen.fasta R=1
/usr/bin/sim4 sample.cdna.fasta sample.cdna.fasta A=5 S=123..1020
/usr/bin/sim4 sample.cdna.fasta sample.gen.fasta K=15 C=11 A=3 W=10
echo "PASS"
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