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project(simka)
cmake_minimum_required(VERSION 2.6)
################################################################################
# The version number.
################################################################################
SET (gatb-tool_VERSION_MAJOR 1)
SET (gatb-tool_VERSION_MINOR 5)
SET (gatb-tool_VERSION_PATCH 2)
IF (DEFINED MAJOR)
SET (gatb-tool_VERSION_MAJOR ${MAJOR})
ENDIF()
IF (DEFINED MINOR)
SET (gatb-tool_VERSION_MINOR ${MINOR})
ENDIF()
IF (DEFINED PATCH)
SET (gatb-tool_VERSION_PATCH ${PATCH})
ENDIF()
set (gatb-tool-version ${gatb-tool_VERSION_MAJOR}.${gatb-tool_VERSION_MINOR}.${gatb-tool_VERSION_PATCH})
# However, continuous integration has priority over local compilation
IF (DEFINED JENKINS_TAG)
SET (gatb-tool-version ${JENKINS_TAG})
ENDIF()
################################################################################
# Define cmake modules directory
################################################################################
SET (GATB_CORE_HOME ${PROJECT_SOURCE_DIR}/thirdparty/gatb-core/gatb-core)
SET (CMAKE_MODULE_PATH ${GATB_CORE_HOME}/cmake)
################################################################################
# THIRD PARTIES
################################################################################
# We don't want to install some GATB-CORE artifacts
SET (GATB_CORE_EXCLUDE_TOOLS 1)
SET (GATB_CORE_EXCLUDE_TESTS 1)
SET (GATB_CORE_EXCLUDE_EXAMPLES 1)
# GATB CORE
#include (GatbCore)
include(GNUInstallDirs)
link_directories (/usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial)
################################################################################
# TOOL
################################################################################
# we get compilation definitions from the gatb-core part
add_definitions (${gatb-core-flags})
# we add a new compilation variable
if (PRINTALL)
#SET( CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DPRINTALL -wno-error" )
endif()
unset(CMAKE_CXX_FLAGS)
set(CMAKE_CXX_FLAGS "-Wno-error -O2 -g -Wunused-result")
# we give the headers directories from :
# - from project source
# - from GATB-CORE source
# - from simka source
include_directories (include ${gatb-core-includes} ${PROJECT_SOURCE_DIR}/src/core ${PROJECT_SOURCE_DIR}/src/minikc ${PROJECT_SOURCE_DIR}/src)
list (APPEND KSIZE_DEFAULT_LIST 32 64 96 128 160 192 224 256)
# we generate one file per template specialization
FOREACH (KSIZE ${KSIZE_DEFAULT_LIST})
configure_file (
${PROJECT_SOURCE_DIR}/src/core/SimkaAlgorithmTemplate.cpp.in
${PROJECT_BINARY_DIR}/src/core/template/SimkaAlgorithmTemplate_${KSIZE}.cpp
)
ENDFOREACH ()
# we define the files to be compiled
file (GLOB_RECURSE ProjectFiles src/core/Simka* ${PROJECT_BINARY_DIR}/src/core/template/*.cpp)
file (GLOB_RECURSE SimkaMinFiles src/simkaMin/MurmurHash3.h src/simkaMin/MurmurHash3.cpp src/simkaMin/*.hpp)# ${PROJECT_BINARY_DIR}/src/core/template/*.cpp)
SET(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/bin)
set(PROJECT_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR}/bin)
add_executable (simka src/SimkaPotara.cpp ${ProjectFiles})
target_link_libraries (simka gatbcore hdf5 z)
add_executable (simkaCountProcess src/minikc/SimkaCountProcess.cpp ${ProjectFiles})
target_link_libraries (simkaCountProcess gatbcore hdf5 z)
add_executable (simkaCount src/SimkaCount.cpp ${ProjectFiles})
target_link_libraries (simkaCount gatbcore hdf5 z)
add_executable (simkaMerge src/SimkaMerge.cpp ${ProjectFiles})
target_link_libraries (simkaMerge gatbcore hdf5 z)
add_executable (simkaMinCore src/simkaMin/SimkaMin.cpp ${SimkaMinFiles})
target_link_libraries (simkaMinCore gatbcore hdf5 z pthread)
################################################################################
# PACKAGING
################################################################################
SET (CPACK_PACKAGE_DESCRIPTION_SUMMARY "gatb-tool ${PROJECT_NAME}")
SET (CPACK_PACKAGE_VENDOR "Genscale team (INRIA)")
SET (CPACK_PACKAGE_VERSION_MAJOR "${gatb-tool_VERSION_MAJOR}")
SET (CPACK_PACKAGE_VERSION_MINOR "${gatb-tool_VERSION_MINOR}")
SET (CPACK_PACKAGE_VERSION_PATCH "${gatb-tool_VERSION_PATCH}")
SET (CPACK_PACKAGE_VERSION "${gatb-tool-version}")
# We chose the kind of archive we want to generate
SET (CPACK_GENERATOR "TGZ")
SET (CPACK_SOURCE_GENERATOR "TGZ")
# We ignore unwanted files for the source archive
SET (CPACK_SOURCE_IGNORE_FILES
"^${PROJECT_SOURCE_DIR}/\\.git/" ;
"^${PROJECT_SOURCE_DIR}/\\.gitmodules" ;
"^${PROJECT_SOURCE_DIR}/\\.gitignore" ;
"^${PROJECT_SOURCE_DIR}/build/" ;
"^${PROJECT_SOURCE_DIR}/dependency/" ;
"^${GATB_CORE_HOME}/\\.cproject" ;
"^${GATB_CORE_HOME}/\\.git/" ;
"^${GATB_CORE_HOME}/\\.project" ;
"^${GATB_CORE_HOME}/\\.gitignore"
)
# For creating the BINARY package we include the files we want
INSTALL (DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/bin DESTINATION .)
INSTALL (DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/example DESTINATION .)
INSTALL (DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/simkaMin DESTINATION .)
INSTALL (DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/scripts DESTINATION . FILES_MATCHING REGEX ".*\\.(py|r)$" PATTERN "jenkins" EXCLUDE)
INSTALL (FILES ${CMAKE_CURRENT_SOURCE_DIR}/README.md DESTINATION .)
INSTALL (FILES ${CMAKE_CURRENT_SOURCE_DIR}/LICENSE DESTINATION .)
# We include the "bin" tag into binary archive file name
set (CPACK_PACKAGE_FILE_NAME ${PROJECT_NAME}-${CPACK_PACKAGE_VERSION}-bin-${CMAKE_SYSTEM_NAME})
# To be done at the end.
INCLUDE (CPack)
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