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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.8.
.TH SIMKAMERGE "1" "September 2019" "simkaMerge 1.5.1" "User Commands"
.SH NAME
simkaMerge \- comparative metagenomics method dedicated to NGS datasets
.SH DESCRIPTION
ERROR: Unknown parameter '\-h'
ERROR: Option '\-nb\-cores' is mandatory
ERROR: Option '\-kmer\-size' is mandatory
ERROR: Option '\-in' is mandatory
ERROR: Option '\-out\-tmp\-simka' is mandatory
ERROR: Option '\-partition\-id' is mandatory
ERROR: Option '\-nb\-cores' is mandatory
ERROR: Option '\-max\-memory' is mandatory
ERROR: Option '\-kmer\-shannon\-index' is mandatory
.PP
[SimkaMerge options]
.TP
\fB\-nb\-cores\fR
(1 arg) : number of cores [default '0']
.TP
\fB\-verbose\fR
(1 arg) : verbosity level [default '1']
.TP
\fB\-version\fR
(0 arg) : version
.TP
\fB\-help\fR
(0 arg) : help
.TP
\fB\-nb\-cores\fR
(1 arg) : nb cores
.TP
\fB\-kmer\-size\fR
(1 arg) : kmer size
.TP
\fB\-in\fR
(1 arg) : input filename
.TP
\fB\-out\-tmp\-simka\fR
(1 arg) : tmp output
.TP
\fB\-partition\-id\fR
(1 arg) : bank name
.TP
\fB\-nb\-cores\fR
(1 arg) : bank name
.TP
\fB\-max\-memory\fR
(1 arg) : bank name
.TP
\fB\-kmer\-shannon\-index\fR (1 arg) :
bank name
.TP
\fB\-simple\-dist\fR
(0 arg) : compute simple distances
.TP
\fB\-complex\-dist\fR
(0 arg) : compute complex distances
.SH AUTHOR
This manpage was written by Shayan Doust for the Debian distribution and can be used for any other usage of the program.
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