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Description: use system-wide debian packaged libraries instead
This is instead of relying on cmake to compile and link against the libraries included within simka
Author: Shayan Doust <hello@shayandoust.me>
Last-Update: 2019-09-09
---
--- simka.orig/CMakeLists.txt
+++ simka/CMakeLists.txt
@@ -42,7 +42,10 @@
SET (GATB_CORE_EXCLUDE_EXAMPLES 1)
# GATB CORE
-include (GatbCore)
+#include (GatbCore)
+
+include(GNUInstallDirs)
+link_directories (/usr/${CMAKE_INSTALL_LIBDIR}/hdf5/serial)
################################################################################
# TOOL
@@ -53,17 +56,21 @@
# we add a new compilation variable
if (PRINTALL)
-SET( CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DPRINTALL" )
+ #SET( CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DPRINTALL -wno-error" )
endif()
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wno-error -O2 -g -Wunused-result")
+
# we give the headers directories from :
# - from project source
# - from GATB-CORE source
# - from simka source
include_directories (include ${gatb-core-includes} ${PROJECT_SOURCE_DIR}/src/core ${PROJECT_SOURCE_DIR}/src/minikc ${PROJECT_SOURCE_DIR}/src)
+list (APPEND KSIZE_DEFAULT_LIST 32 64 96 128 160 192 224 256)
+
# we generate one file per template specialization
-FOREACH (KSIZE ${gatb-core-klist})
+FOREACH (KSIZE ${KSIZE_DEFAULT_LIST})
configure_file (
${PROJECT_SOURCE_DIR}/src/core/SimkaAlgorithmTemplate.cpp.in
${PROJECT_BINARY_DIR}/src/core/template/SimkaAlgorithmTemplate_${KSIZE}.cpp
@@ -78,18 +85,18 @@
set(PROJECT_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR}/bin)
add_executable (simka src/SimkaPotara.cpp ${ProjectFiles})
-target_link_libraries (simka ${gatb-core-libraries})
+target_link_libraries (simka gatbcore hdf5 z)
add_executable (simkaCountProcess src/minikc/SimkaCountProcess.cpp ${ProjectFiles})
-target_link_libraries (simkaCountProcess ${gatb-core-libraries})
+target_link_libraries (simkaCountProcess gatbcore hdf5 z)
add_executable (simkaCount src/SimkaCount.cpp ${ProjectFiles})
-target_link_libraries (simkaCount ${gatb-core-libraries})
+target_link_libraries (simkaCount gatbcore hdf5 z)
add_executable (simkaMerge src/SimkaMerge.cpp ${ProjectFiles})
-target_link_libraries (simkaMerge ${gatb-core-libraries})
+target_link_libraries (simkaMerge gatbcore hdf5 z)
add_executable (simkaMinCore src/simkaMin/SimkaMin.cpp ${SimkaMinFiles})
-target_link_libraries (simkaMinCore ${gatb-core-libraries})
+target_link_libraries (simkaMinCore gatbcore hdf5 z pthread)
################################################################################
# DOCUMENTATION GENERATION
|
