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/Beir7 - handles Beir7 parameter specifications (no refresh,
====== because no 'value' data member)
double beta() Beir7's beta, eta, spread and dist parameter values
double eta()
double spread()
uint16_t dist()
settings(out) - write settings to out
/ConfFile - derived from Conifg, handles ConfigInfo and Options
========= see Config's public interface
LineVect lines(char const *id) - configuration file lines matching id
const_iter end() - end-iterator for find()
const_iter find(char const *id) - 1st configuration file line matching
id
size_t value(char const *id) - numeric value on the first 'id' line
(0 if no 'id' line)
ofstream settingsFile(isze_t iter) - file to contain the settings
ofstream dataFile(isze_t iter) - file to contain the data
ofstream roundsFile(isze_t iter) - file to contain the rounds info
ofstream sensitivityFile(isze_t iter) - file to contain the
sensitivity info
/Costs - Costs parameters and processing
======
/Densities - Config file breast density parameters
==========
DensityVect densities() - vector with density parameters:
uint16_t beginAge(), endAge(),
double birads(size_t idx)
Uint16Vect indices(Uint16Vect ages) - indices of birads to use
for each (Screening) age
/Globals - Fixed constants / enum values / typedefs / free
======== functions used by many parts of the program
/Growth - Tumor growth parameters
=======
AgeGroup group(idx) - ageGroup[idx]:
uint16_t beginAge(), endAge();
VSD mean(), stdDev();
void refresh() - random noise to selfMu and ageGroups
VSD start() - start diameter
VSD selfMu() - self detect mu
VSD selfSigma() - self detect sigma
settings(out) - write settings to out
/Incidence - used by TumorInfo to store the TumorIncidence (carrier)
========== info
params() - vector of carrier parameter values
Carrierspecifications: params() offer vector of Params:
idx(): carrier index
prob(): carrier probability
risk(): VSD lifetime risk
mean(): VSD mean age
stdDev(): VSD std. dev.
DoubleVect2 tumorRisk(): vector of [END_CARRIERS][END_AGE]
DoubleVect tumorRisk(size_t idx): vector [idx]
void refresh() - add random noise to the values returned by
VSD value()
uint16_t carrier() - randomly selected carrier index
settings(out) - write settings to out
/Loop - perform one analysis
=====
/Modalities - Config file modality parameters
===========
operator[] - vector<Params>, [XRAY][MAMMO,TOMO]
uint16_t dose(size_t idx),
double sens[size_t idx),
Specificity const &operator[]
Params mammoParams() = [XRAY][MAMMO]
Params tomoParams() = [XRAY][TOMO]
Specificity: uint16_t: beginAge(), endAge()
double: value()
settings(out) - write settings to out
/Options, - prepare direct access of processed arguments
=========
/Random - Singleton encapsulating statistical distributions
=======
void reset(size_t seed);
double uniform(); - {0, 1 }: random values from their
double normal(); - {0, 1 } statistical distributions
double logNormal(double mean, double stdDev); - {0, 1 }
double exponential(double mean); - { 1 }
static size_t nowSeed(); - random seed conform simrisc < V 12.00.00
/Scenario - Parameters for a single simulation
=========
RoundVect rounds() - vector of Round sreening rounds:
uint16_t age(), mammo() tomo()
Uint16Vect ages() - vector of ages of the rounds
Round rounds(idx) - Rounds by index
uint16_t age(idx) - age by idx
bool spread() - true: apply variations to configuration
parameters
size_t iterations(); - #iterations to perform
size_t seed() - intial seed
size_t nWomen() - #women to use
size_t discountAge() - discountReferenceAge
/Screening - Config file screening parameters
==========
Spec error(), rate() - systematicError, attendanceRate:
double value(), uint16_t dist()
DoubleVect const &setRadiationRisk(
Scenario::RoundVect const &rounds,
Uint16Vect const &indices,
double beta, double eta)
DoubleVect const &radiationRisk();
void beir7dose(uint16_t const *) - beir7 dose vector to use
settings(out) - write settings to out
/Simulator - run the analyses
==========
run() - runs the analyses for each of the Scenarios
/Spread - Classes supporting parameter spreading may derive from
======= this class for handling spreading.
double refresh(double orgValue, double orgSpread, uint16_t distrib);
/Survival - interfaces to all Survival data
=========
VSD operator[] - vector of survival VSD parameter values:
[0] = type 'a' .. [3] = type 'd'
void refresh() adds random noise to the vsd fields of the
parameters
settings(out) - write settings to out
/Tumor - Tumor handling object
======
reset() - reset the tumor's variables for the next
analysis.
// cpt the tumor's characteristics
void characteristics(uint16_t age); // at 'age'
operator bool() - true when the tumor is active
uint16_t age() - age at which the tumor appears
selfDetectAge(); - age at which the tumor is self-detected
/TumorInfo - interface to the tumor config parameters
========== (Incidence, Survival, Growth, Beir7)
void refresh(); - optionally adds random noise to VSD values
void cptRisk(); - compute the carrier/age risk values
bool spread(); - true: apply variations to configuration
Incidence incidence() - returns the Incidence (carriers) object;
uint16_t induction(); - beir model to use
Beir7 beir7(); - returns the beir7 object;
Growth growth(); - returns the growth object;
Survival survival(); - returns the survival object;
DoubleVect cumTotalRisk() - returns the cum. total risk vector
void cumTotalRisk(uint16_t carrierIdx,
DoubleVect const &radiationRisk);
/VSD - ValueSpreadDistribution: storage class storing a
==== value, spread and distribution
extracts values from an istream
double value()
double spread()
uint16_t dist()
void refresh() - add random noise to the values returned by value()
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