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#ifndef INCLUDED_OPTIONS_
#define INCLUDED_OPTIONS_
#include <iosfwd>
#include <string>
#include <unordered_map>
#include "../enums/enums.h"
namespace FBB
{
class Arg;
}
class Options
{
enum Specified
{
STARTUP,
ANALYSIS
};
FBB::Arg const &d_arg;
std::string d_cumDeath; // file containing the cum. death props.
std::string d_home; // current 'HOME' directory
std::string d_specified[2]; // specified options:
// [0]: command-line, [1]: analysis
bool d_specificAges = false;
double d_naturalDeathAge; // single run, subject age
double d_tumorAge; // single run, tumor self-detect age
size_t d_lastCase; // compute until d_lastCase, report
// d_lastCase's results
std::string d_base[2]; // guaranteed to end in '/'
// [0]: as specified, [1]: as used
// in Analysis: sections
std::string d_cancer[2]; // [0]: as specified, [1]: as used
// in Analysis: sections
std::string d_config[2]; // [0]: as specified, [1]: as used
// in Analysis: sections
std::string d_dataFile[2]; // [0]: as specified, [1]: as used
// after replacing + by base
std::string d_parametersFile[2];
std::string d_roundsFile[2];
//FBB std::string d_sensitivityFile[2];
std::string d_spreadFile[2];
static char const s_base[];
static char const s_config[];
static std::unordered_map<int, char const *> s_fileName;
static Options *s_options;
public:
static Options &instance();
Options(Options const &other) = delete;
void reset(); // reset options to the
// default/command-line values
std::string const &base() const; // .f
std::string const &configFile() const; // .f
std::string const &cumDeathFile() const; // .f
std::string const ¶metersFile() const; // .f
std::string const &dataFile() const; // .f
std::string const &roundsFile() const; // .f
//FBB std::string const &sensitivityFile() const; // .f
std::string const &spreadFile() const; // .f
bool specificAges() const; // .f
void fixedNaturalDeathAge(double &deathAge) const;
void fixedTumorAge(double &tumorAge) const;
size_t lastCase() const; // .f
void activate(); // [ANALYSIS] = [STARTUP]
// try to change this option's
// value in this analysis
bool alter(int optChar, std::string const &value);
void actualize(); // transform ~ and +
bool tnm() const; // --tnm was specified
private:
Options();
void baseOption();
void configOption();
void cumDeathOption(std::string const &value);
void conflictCheck() const; // prevent conflicting options
void deathAge(std::string const &value);
void deathAgeOption(std::string const &value);
void fileOption(std::string *dest, int option);
void lastCase(std::string const &value);
void lastCaseOption(std::string const &value);
void logOption(std::string const &value);
// xxx[STARTUP]: as specified, xxx[ANALYSIS]: as used
void replaceHome(std::string &path);
void replacePlus(std::string &fname);
void setBase();
void setSimulationType(); // handle the -c option
void tumorAge(std::string const &value);
void tumorAgeOption(std::string const &value);
// dest[0]: as specified, dest[1]: as used
// void setFile(std::string *dest, std::string const &newValue, // 2
// int option);
};
#include "options.f"
#endif
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