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#ifndef INCLUDED_MODALITIES_
#define INCLUDED_MODALITIES_
// See README
#include <iosfwd>
#include <vector>
#include "../typedefs/typedefs.h"
#include "../enums/enums.h"
class ModBase;
class Tumor;
namespace FBB
{
class CSVTable;
}
class Modalities
{
Tumor const &d_tumor; // used by Mammo and CT
std::vector<ModBase *> d_modBaseVect; // defined modalities
StringVect d_modalityIDs; // and their IDs
StringSet d_active; // the active modalities
std::vector<ModBase *> d_activeVect; // ptrs to active modalities
public:
Modalities(Tumor const &tumor);
~Modalities();
// visit all modalities and initialize
// their data, see loop/initialize
// see also Loop::d_nModalityFP: modality specific, to become
// a size_t variables in each used modality
void resetCounters(size_t nRounds);
// returns UNDEFINED if 'modality' is unknown
uint16_t find(std::string const &modality) const;
// return a vector of ModBase ptrs matching the names specified
// in 'active'
std::vector<ModBase *> use(Uint16Vect const &active) const;
StringVect const &modalityIDs() const;
void vary(std::ostream &out);
void legend(std::ostream &out) const;
void writeParameters(std::ostream &out) const;
// determine the Mod.
size_t roundFmt(FBB::CSVTable &tab) const; // #fields & width
void roundHeaders(FBB::CSVTable &tab) const; // write the Mod names
// write the Mod data
void writeRounds(FBB::CSVTable &tmp, size_t round) const;
void active(); // sets d_activeVect
void activate(std::string const &modality);
std::vector<ModBase *> const &activeMods() const; // .f
private:
void addMod(ModBase *modBase);
};
// double specificity(age) const: age may not be negative
// currently not used
// double const *hasDose(StringVect const &ids) const;
#include "modalities.f"
#endif
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