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#define XERR
#include "options.ih"
void Options::activate()
{
// activate the options, to be used in the analyses.
// d_specified contains the single-letter option characters
// of the options that were specified on the command-line
d_specified[ANALYSIS] = d_specified[STARTUP];
d_base[ANALYSIS] = d_base[STARTUP];
d_cancer[ANALYSIS] = d_cancer[STARTUP];
d_config[ANALYSIS] = d_config[STARTUP];
d_dataFile[ANALYSIS] = d_dataFile[STARTUP];
d_parametersFile[ANALYSIS] = d_parametersFile[STARTUP];
d_roundsFile[ANALYSIS] = d_roundsFile[STARTUP];
//FBB d_sensitivityFile[ANALYSIS] = d_sensitivityFile[STARTUP];
d_spreadFile[ANALYSIS] = d_spreadFile[STARTUP];
}
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