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Source: skesa
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
libboost-dev,
libboost-chrono-dev,
libboost-iostreams-dev,
libboost-program-options-dev,
libboost-regex-dev,
libboost-system-dev,
libboost-timer-dev,
libncbi-vdb-dev,
libngs-sdk-dev
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/skesa
Vcs-Git: https://salsa.debian.org/med-team/skesa.git
Homepage: https://github.com/ncbi/SKESA
Package: skesa
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Description: strategic Kmer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for
assembling reads of microbial genomes sequenced using Illumina.
Comparison with SPAdes and MegaHit shows that SKESA produces assemblies
that have high sequence quality and contiguity, handles low-level
contamination in reads, is fast, and produces an identical assembly for
the same input when assembled multiple times with the same or different
compute resources. SKESA has been used for assembling over 272,000 read
sets in the Sequence Read Archive at NCBI and for real-time pathogen
detection.
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